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Sure, you could use percona tool for alter table.
you could find reference as below link.
https://medium.com/@soomiq/altering-large-mysql-table-using-percona-toolkit-on-aws-aurora-acb6e57a33d4
But I recommend that you could use gh-ost for that. it is trigger-less which I think much better than percona online schema change tool. I have tested and it works fine with aurora 5.6 & 5.7
https://github.com/github/gh-ost
Hope this could solve your problem.
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