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The word "stack" generally would refer to CloudFormation stacks so that would be the first place I would check.
It would be in the Control Tower management account. It's possible that a CloudFormation stack was created to help provision some of the Control Tower resources for the account, but something failed along the way.
It's strange that you don't see the account on the organizations page, though. I would also try to recover the account using "Forgot Password" with the root user email you selected to determine if the account was created. Perhaps the Cloudformation stacks were created (and failed) before the account was 100% finished leaving the account in a state where it was rolled back (deleted by AWS) but the CloudFormation stacks were not.
Did you use Account Factory within Control Tower to create the account? If so you can verify the status of the account in AWS Service Catalog under Provisioned products list.
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