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Just because a table is in the catalog it doesn't mean that any client is able to interpret it and use it.
In this case that DDB table is usable by Glue jobs but not Athena (which is trying to read it as a regular tale).
To use DDB for Athena, they have their own way: https://docs.aws.amazon.com/athena/latest/ug/connectors-dynamodb.html
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Can you provide the table metadata from Glue Mestastore?