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Hi Chedi,
AWS has no documentation about setting up Cognito user pool with Shibboleth. However, Shibboleth itself has a "Cognito guide" [1] in their knowledge-base. It is a bit old (2018), but it gives me the impression that Shibboleth should be setup as generic SAML provider. Apologies if you were already familiar with Shibboleth's documentation.
I am also attaching some a link to some guides[2] that might help you setting up this federation.
[1] https://shibboleth.atlassian.net/wiki/spaces/KB/pages/1429930512/AmazonCognito [2] https://repost.aws/knowledge-center/cognito-third-party-saml-idp
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